Should You Deduct Your Home Office? The Tax Break That Might Cost You Later
- Koen Van Duyse
- Mar 25
- 2 min read
Working from home in North San Diego—whether you’re freelancing, running a consulting gig, or building your own side hustle—comes with perks.
One of the most tempting? The home office deduction.
But here’s the catch: deducting your home office now might increase your
taxes later when you sell your home. Let’s break it all down.
First, What Is the Home Office Deduction?
If you’re self-employed and have a dedicated space used exclusively for business, you can deduct a portion of:
Your rent or mortgage interest
Utilities and internet
Property taxes
Maintenance and repairs
You can use the simplified method (based on square footage) or the actual expenses method (based on percentage of home used for business).

The Hidden Cost: Capital Gains Tax When You Sell
Here’s what most people don’t realize:
If you claim the home office deduction using the actual expenses method, the IRS considers that portion of your home a business asset. When you sell your home, that small piece is not protected by the primary residence exclusion (the $250K/$500K capital gain tax break).
That means:
You’ll owe capital gains tax on the business-use portion of your home.
Plus, you’ll need to recapture depreciation—even if you never saw any cash benefit from it.
Example: You’ve been deducting 10% of your home for business for 5 years in Encinitas. You sell the house with a $300K gain. You may owe tax on 10% of that gain ($30K), even if you lived there full-time.
So, Should You Deduct Your Home Office?
Consider deducting if:
You plan to rent long-term or never sell
Your business expenses are high and you need the deduction
You use the simplified method (less audit risk, no depreciation recapture)
Consider skipping if:
You expect a big gain when selling your home (very likely in North San Diego!)
The home office deduction is small and not worth the future tax cost
You’re not ready to track expenses or face a higher audit risk
Other Deductions for Self-Employed Encinitas Locals
Even if you skip the home office, there are still plenty of legitimate write-offs:
1. Health Insurance Premiums For you and your family (if you’re not covered elsewhere)
2. Business Mileage Keep track when visiting clients, vendors, or networking events.
3. Equipment, Software & Subscriptions Your laptop, Canva Pro, tax software, or Zoom account all count.
4. Marketing & Branding Business cards, social media ads, email tools—yes, even your Squarespace site.
5. Meals (When Business-Related) Coffee meetings, lunch with clients, or meals while traveling—50% deductible.



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